Ligand · LOP
LOP · (1R)-2-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(dodecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate
LOP, (1R)-2-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(dodecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate (C35 H68 N O8 P, 661.9 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (8 PDB entries). Every binding site…
- Component
- LOP
- Formula
- C35 H68 N O8 P
- Class
- ligand
- Structures
- 11
- PDB entries
- 8
Binding sites
LOP in 11 structures; the first of them:
- 5KKZ · Rhodobacter sphaeroides bc1 with famoxadone · LOP A1006 · binds MET44, LEU103, ILE106, LEU110, PHE113, TYR117, TYR118, VAL262 and 4 more
- 5KLI · Rhodobacter sphaeroides bc1 with stigmatellin and antimycin · LOP A1006 · binds MET44, TRP47, LEU103, ILE106, LEU110, PHE113, ARG114, TYR117 and 12 more
- 7PSN · S. cerevisiae Atm1 in MSP1E3D1 nanodiscs with bound AMP-PNP and Mg2+ · LOP A703 · binds ILE119, ILE123, VAL126, GLN127, PHE130, SER240, PHE241, SER244 and 5 more
- 8BGW · CryoEM structure of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes… · LOP A807 · binds MET1, TRP8, LEU11, ILE12, LEU15, LEU438, ARG439, LYS445 and 13 more
- 5KKZ · Rhodobacter sphaeroides BC1 with famoxadone · LOP A1006 · binds MET44, LEU103, ILE106, LEU110, PHE113, TYR117, TYR118, VAL262 and 4 more
- 5KLI · Rhodobacter sphaeroides BC1 with stigmatellin and antimycin · LOP A1006 · binds MET44, TRP47, LEU103, ILE106, LEU110, PHE113, ARG114, TYR117 and 8 more
- 6BQC · Cyclopropane fatty acid synthase from E. COLI · LOP A402 · binds LEU58, PHE76, TYR137, GLY236, GLU239, HIS240, ILE268, SER270 and 14 more
- 6QQ6 · Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qnor) VAL495ALA… · LOP A805 · binds PHE680, THR681, PRO685, LEU688, ILE689, HIS692, ILE712, MET231
- 7PSL · S. cerevisiae ATM1 in MSP1D1 nanodiscs in nucleotide-free state · LOP A701 · binds ILE119, ILE123, GLN127, PHE130, SER240, PHE241, SER244, VAL245 and 2 more
- 7PSM · S. cerevisiae ATM1 in MSP1D1 nanodiscs with bound AMP-pnp and MG2+ · LOP A703 · binds VAL126, GLN127, PHE130, PHE241, SER244, VAL245, GLY248, ILE249 and 2 more
Residues it binds most
PHE 43, LEU 29, TYR 32, ILE 32, TRP 30, VAL 31, ALA 22, ARG 19, GLY 18, MET 25 (residue and the binding sites it lines).
Found with
- HEM · Protoporphyrin IX containing Fe
- FES · Fe2/s2 (inorganic) cluster
- HEC · Heme C
- SR · Strontium ion
- ANP · Phosphoaminophosphonic acid-adenylate ester
- MG · Magnesium ion
- ANJ · (2R,3S,6S,7R,8R)-3-{[3-(formylamino)-2-hydroxybenzoyl]amino}-8-hexyl-2,6-dimethyl-4,9-dioxo-1,5-dioxonan-7-yl (2S)-2-methylbutanoate
- ASC · Ascorbic acid
- FMX · Famoxadone
- SMA · Stigmatellin A
- CA · Calcium ion
- FE · Fe (III) ion
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