MolNFT v2 · #208247 · protein + DNA
SsoMCM hexamer bound to Mg/ADP-BeFx and 16-mer oligo-dT. Class 2
8EAI: “SsoMCM hexamer bound to Mg/ADP-BeFx and 16-mer oligo-dT. Class 2”. Electron microscopy at 2.76, 3 ligands (08T, ZN, MG). MolNFT v2 #208247 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8EAI
- Type
- protein + DNA
- Length
- 3,017 residues
- Chains
- 7
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.76
- Source
- Saccharolobus solfataricus P2; SYNTHETIC CONSTRUCT
- UniProt
- Q9UXG1
- Ligands
- 08T, ZN, MG
Structure
electron microscopy · resolution 2.76 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 161 | — | Q9UXG1 |
| B, C, D, E | — | protein | 589 | — | Q9UXG1 |
| F | — | protein | 491 | — | Q9UXG1 |
| X | — | dna | 9 | — | — |
Ligands and binding sites
- 08T · [[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium · ligand · 4 copies · chains B, C, D, E, F
- ZN · Zinc ion · metal · 6 copies · chains A, B, C, D, E, F
- MG · Magnesium ion · metal · 4 copies · chains B, C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UXG1
- Elsewhere: RCSB PDB 8EAI · PDBe 8EAI · UniProt Q9UXG1
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