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Ligand · 08T

08T · [[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium

08T, [[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium (C10 H14 Be F3 N5 O10 P2, 492.2 g/mol), in the MolNFT structures on GenesisL1: bound…

Component
08T
Formula
C10 H14 Be F3 N5 O10 P2
Class
ligand
Structures
12
PDB entries
12

Binding sites

08T in 12 structures; the first of them:

  • 8EAH · SsoMCM hexamer bound to Mg/ADP-BeFx and 16-mer oligo-dT. Class 1 · 08T A703 · binds SER302, ILE303, TYR304, HIS306, ASP341, PRO342, GLY343, THR344 and 13 more
  • 8EAI · SsoMCM hexamer bound to Mg/ADP-BeFx and 16-mer oligo-dT. Class 2 · 08T B703 · binds SER302, ILE303, TYR304, ASP341, PRO342, GLY343, THR344, ALA345 and 12 more
  • 8EAK · SsoMCM hexamer bound to Mg/ADP-BeFx and 46-mer DNA strand. Class 2 · 08T B703 · binds SER302, ILE303, TYR304, HIS306, ASP341, PRO342, GLY343, THR344 and 14 more
  • 8EAM · SsoMCM hexamer bound to Mg/ADP-BeFx and DNA. Class 2. Merged particles from datasets with… · 08T B703 · binds SER302, ILE303, TYR304, ASP341, PRO342, GLY343, THR344, ALA345 and 13 more
  • 8U9Z · Cdc48-Shp1 unfolding native substrate, Class 7 · 08T A901 · binds ASP215, GLY217, PRO256, PRO257, GLY258, THR259, GLY260, LYS261 and 10 more
  • 8UA1 · Cdc48-Shp1 unfolding native substrate, Class 9 · 08T A901 · binds ASP215, ILE216, GLY217, CYS219, PRO256, PRO257, GLY258, THR259 and 14 more
  • 8UAA · Cdc48-Shp1 unfolding native substrate, Class 3 · 08T A901 · binds ASP215, ILE216, GLY217, PRO256, PRO257, GLY258, THR259, GLY260 and 11 more
  • 8UH7 · Structure of T4 Bacteriophage clamp loader bound to the T4 clamp, primer-template DNA… · 08T B401 · binds GLU12, TYR15, ARG16, PRO17, CYS23, ILE24, LEU25, PRO52 and 15 more

Residues it binds most

GLY 56, ARG 56, PRO 56, THR 56, GLU 41, GLN 36, ILE 44, LEU 46, LYS 56, ASP 40 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ADP · Adenosine-5'-diphosphate
  • ZN · Zinc ion

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