MolNFT v2 · #199391 · protein + RNA
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)
7WTQ: “Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-2 (without Rps2)”. Electron microscopy at 3.7, 1 ligand (ZN). MolNFT v2 #199391 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7WTQ
- Type
- protein + RNA
- Length
- 4,334 residues
- Chains
- 18
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.7
- Source
- Saccharomyces cerevisiae
- UniProt
- P33442, P0CX35, P0CX37, P26786, P0CX39, O13516, P0CX47, P05756, P06367, P0C0W1, P0CX29, P0CX31, P35997, P0CX33, Q99216, P25627, Q07381
- Ligands
- ZN
Structure
electron microscopy · resolution 3.7 · 18 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C2 | — | rna | 1255 | — | — |
| SB | — | protein | 216 | — | P33442 |
| SE | — | protein | 260 | — | P0CX35 |
| SG | — | protein | 218 | — | P0CX37 |
| SH | — | protein | 185 | — | P26786 |
| SI | — | protein | 188 | — | P0CX39 |
| SJ | — | protein | 185 | — | O13516 |
| SL | — | protein | 146 | — | P0CX47 |
| SN | — | protein | 150 | — | P05756 |
| SO | — | protein | 128 | — | P06367 |
| SW | — | protein | 129 | — | P0C0W1 |
| SX | — | protein | 144 | — | P0CX29 |
| SY | — | protein | 134 | — | P0CX31 |
| Sb | — | protein | 81 | — | P35997 |
| Se | — | protein | 38 | — | P0CX33 |
| CA | — | protein | 181 | — | Q99216 |
| CB | — | protein | 35 | — | P25627 |
| CC | — | protein | 661 | — | Q07381 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains Sb
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P0C0W1 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S22-a (P0C0W1) · a predicted model of the same protein · chain SW against A, TM-score 0.98
- P0CX39 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S8-a (P0CX39) · a predicted model of the same protein · chain SI against A, TM-score 0.98
- P05756 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S13 (P05756) · a predicted model of the same protein · chain SN against A, TM-score 0.97
- Q99216 · AlphaFold monomer V2.0 prediction for pre-rRNA-processing protein PNO1 (Q99216) · a predicted model of the same protein · chain CA against A, TM-score 0.97
- P06367 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S14-a (P06367) · a predicted model of the same protein · chain SO against A, TM-score 0.95
- P0CX31 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S24-a (P0CX31) · a predicted model of the same protein · chain SY against A, TM-score 0.95
- P0CX47 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S11-a (P0CX47) · a predicted model of the same protein · chain SL against A, TM-score 0.94
- P35997 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S27-a (P35997) · a predicted model of the same protein · chain Sb against A, TM-score 0.92
- Q07381 · AlphaFold monomer V2.0 prediction for ribosome biogenesis protein TSR1 (Q07381) · a predicted model of the same protein · chain CC against A, TM-score 0.91
- P0CX29 · AlphaFold monomer V2.0 prediction for 40S ribosomal protein S23-a (P0CX29) · a predicted model of the same protein · chain SX against A, TM-score 0.86
- P25627 · AlphaFold monomer V2.0 prediction for 18S rRNA (GUANINE(1575)-N(7))-methyltransferase… · a predicted model of the same protein · chain CB against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P33442
- Every structure of UniProt P0CX35
- Every structure of UniProt P0CX37
- Every structure of UniProt P26786
- Every structure of UniProt P0CX39
- Every structure of UniProt O13516
- Every structure of UniProt P0CX47
- Every structure of UniProt P05756
- Every structure of UniProt P06367
- Every structure of UniProt P0C0W1
- Every structure of UniProt P0CX29
- Every structure of UniProt P0CX31
- Every structure of UniProt P35997
- Every structure of UniProt P0CX33
- Every structure of UniProt Q99216
- Every structure of UniProt P25627
- Every structure of UniProt Q07381
- Elsewhere: RCSB PDB 7WTQ · PDBe 7WTQ · UniProt P33442 · UniProt P0CX35 · UniProt P0CX37 · UniProt P26786 · UniProt P0CX39 · UniProt O13516 · UniProt P0CX47 · UniProt P05756 · UniProt P06367 · UniProt P0C0W1 · UniProt P0CX29 · UniProt P0CX31 · UniProt P35997 · UniProt P0CX33 · UniProt Q99216 · UniProt P25627 · UniProt Q07381
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