MolNFT v2 · #197036 · protein
Structure of Contracted C. elegans TMC-1 complex
7USX: “Structure of Contracted C. elegans TMC-1 complex”. Electron microscopy at 3.09, 8 ligands (D12, R16, PLM). MolNFT v2 #197036 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7USX
- Type
- protein
- Length
- 1,670 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.09
- Source
- Caenorhabditis elegans
- UniProt
- D3KZG3, Q93640, Q9XXE7
- Ligands
- D12, R16, PLM, PEE, CLR, 3PE, NAG, CA
Structure
electron microscopy · resolution 3.09 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 605 | — | D3KZG3 |
| C, E | — | protein | 184 | — | Q93640 |
| D, F | — | protein | 46 | — | Q9XXE7 |
Ligands and binding sites
- D12 · Dodecane · ligand · 28 copies · chains A, B, D, F
- R16 · Hexadecane · ligand · 8 copies · chains A, B
- PLM · Palmitic acid · ligand · 4 copies · chains A, D, B, F
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · ligand · 2 copies · chains A, C, B, E
- CLR · Cholesterol · ligand · 2 copies · chains A, B
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · 2 copies · chains A, D, B, F
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A, B
- CA · Calcium ion · metal · 8 copies · chains A, B, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3KZG3
- Every structure of UniProt Q93640
- Every structure of UniProt Q9XXE7
- Elsewhere: RCSB PDB 7USX · PDBe 7USX · UniProt D3KZG3 · UniProt Q93640 · UniProt Q9XXE7
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