MolNFT v2 · #191215 · protein
Crystal structure of serine hydroxymethyltransferase, isoform 2 from Arabidopsis thaliana (SHM2)
7PZZ: “Crystal structure of serine hydroxymethyltransferase, isoform 2 from Arabidopsis thaliana (SHM2)”. X-ray diffraction at 1.65, 2 ligands (CL, SO4). MolNFT v2 #191215 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7PZZ
- Type
- protein
- Length
- 1,902 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.65
- Source
- Arabidopsis thaliana
- UniProt
- Q94C74
- Ligands
- CL, SO4
Structure
x-ray diffraction · resolution 1.65 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 475 | — | Q94C74 |
| B | — | protein | 474 | — | Q94C74 |
| C | — | protein | 473 | — | Q94C74 |
| D | — | protein | 480 | — | Q94C74 |
Ligands and binding sites
- CL · Chloride ion · ion · 4 copies · chains A, B, C, D
- SO4 · Sulfate ion · ion · 3 copies · chains C
- EDO · 1,2-ethanediol · additive · 28 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains C, D
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7PZZ · Crystal structure of serine hydroxymethyltransferase, isoform 2 from arabidopsis thaliana… · the same entry in another collection · chain D against D, TM-score 1.00
- Q94C74 · AlphaFold monomer V2.0 prediction for serine hydroxymethyltransferase 2, mitochondrial… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q94C74
- Elsewhere: RCSB PDB 7PZZ · PDBe 7PZZ · UniProt Q94C74
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