GL1X · GenesisL1 explorer

MolNFT v2 · #190109 · protein

MHC I A02 Allele presenting YLQPRTFLL

7P3D: “MHC I A02 Allele presenting YLQPRTFLL”. X-ray diffraction at 1.67, 1 ligand (CA). MolNFT v2 #190109 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7P3D
Type
protein
Length
385 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.67
Source
Homo sapiens; SYNTHETIC CONSTRUCT
UniProt
A0A5B8RNS7, P61769, P0DTC2
Ligands
CA

Structure

x-ray diffraction · resolution 1.67 · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein276—A0A5B8RNS7
B—protein100—P61769
C—protein9—P0DTC2

Ligands and binding sites

  • CA · Calcium ion · metal · chains B
  • EDO · 1,2-ethanediol · additive · 6 copies · chains A, C, B
  • ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7P3D · MHC I A02 allele presenting ylqprtfll · the same entry in another collection · chain A against A, TM-score 1.00
  • P61769 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P61769) · a predicted model of the same protein · chain B against A, TM-score 0.98

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