MolNFT v2 · #179001 · protein
Human JMJD5 in complex with MN and 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid.
7DYW: “Human JMJD5 in complex with MN and 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid.”. X-ray diffraction at 2.13, 2 ligands (HRL, MN). MolNFT v2 #179001 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DYW
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.13
- Source
- Homo sapiens
- UniProt
- Q8N371
- Ligands
- HRL, MN
Structure
x-ray diffraction · resolution 2.13 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 236 | — | Q8N371 |
Ligands and binding sites
- HRL · 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid · ligand · chains A
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DYW · Human JMJD5 in complex with mn and 5-((2-METHOXYBENZYL)AMINO)PYRIDINE- 2,4-dicarboxylic… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N371
- Elsewhere: RCSB PDB 7DYW · PDBe 7DYW · UniProt Q8N371
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