MolNFT v1 · #176828 · protein
Human JMJD5 in complex with mn and 5-((2-METHOXYBENZYL)AMINO)PYRIDINE- 2,4-dicarboxylic acid.
7DYW: “Human JMJD5 in complex with mn and 5-((2-METHOXYBENZYL)AMINO)PYRIDINE- 2,4-dicarboxylic acid.”. X-ray diffraction, 2 ligands (HRL, MN). MolNFT v1 #176828 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7DYW
- Type
- protein
- Length
- 236 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8N371
- Ligands
- HRL, MN
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 236 | — | Q8N371 |
Ligands and binding sites
- HRL · 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic acid · ligand · chains A
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7DYW · Human JMJD5 in complex with MN and 5-((2-methoxybenzyl)amino)pyridine-2,4-dicarboxylic… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N371 · AlphaFold monomer V2.0 prediction for bifunctional peptidase and arginyl-hydroxylase… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N371
- Elsewhere: RCSB PDB 7DYW · PDBe 7DYW · UniProt Q8N371
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