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MolNFT v2 · #175882 · protein

Cys-42-tethered stabilizer 11 of 14-3-3(sigma)/ERa PPI

7BA9 · 14-3-3 protein sigma: “Cys-42-tethered stabilizer 11 of 14-3-3(sigma)/ERa PPI”. X-ray diffraction at 1.48, 2 ligands (T6N, MG), 1 pocket (best druggability 0.49). MolNFT v2 #175882 on GenesisL1: 3D structure, binding sites and…

PDB
7BA9
Type
protein
Length
241 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.48
Source
Homo sapiens; SYNTHETIC CONSTRUCT
Molecule
14-3-3 protein sigma; Estrogen receptor
UniProt
P31947, P03372
Ligands
T6N, MG
Pockets
1 · best druggability 0.49

Structure

x-ray diffraction · resolution 1.48 · 2 distinct chains · 78% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
A14-3-3 protein sigmaprotein23680% helix, 0% strandP31947
BEstrogen receptorprotein50% helix, 0% strandP03372

Ligands and binding sites

  • T6N · 2-methyl-2-(4-methylphenoxy)-~{N}-(2-sulfanylethyl) propanamide · ligand · chains A, B
  • MG · Magnesium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11170.490.7919T6N

Interfaces

1 interface between chains.

  • A–B · 454 Ų buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 covalent, 1 modified (covalent ligand, phosphorylation).

Compared structures

  • 7BA9 · Cys-42-tethered stabilizer 11 of 14-3-3(SIGMA)/ERA ppi · the same entry in another collection · chain A against A, TM-score 1.00
  • P31947 · AlphaFold monomer V2.0 prediction for 14-3-3 protein sigma (P31947) · a predicted model of the same protein · chain A against A, TM-score 0.95
  • P03372 · AlphaFold monomer V2.0 prediction for estrogen receptor (P03372) · a predicted model of the same protein · chain B against A, TM-score 0.93

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