GL1X · GenesisL1 explorer

MolNFT v2 · #173135 · protein

Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP co-crystallization with spheroidene

6Z1J: “Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP co-crystallization with spheroidene”. X-ray diffraction at 2.1, 8 ligands (UNL, BCL, BPH). MolNFT v2 #173135 on GenesisL1: 3D structure, binding sites and…

PDB
6Z1J
Type
protein
Length
823 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.1
Source
Rhodobacter sphaeroides
UniProt
P0C0Y7, P0C0Y8, P0C0Y9
Ligands
UNL, BCL, BPH, NKP, U10, SPN, FE, PO4

Structure

x-ray diffraction · resolution 2.1 · 3 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
H—protein241—P0C0Y7
L—protein281—P0C0Y8
M—protein301—P0C0Y9

Ligands and binding sites

  • UNL · Unknown ligand · ligand · 5 copies · chains L, M, H
  • BCL · Bacteriochlorophyll A · ligand · 4 copies · chains L, M
  • BPH · Bacteriopheophytin A · ligand · 2 copies · chains L, M
  • NKP · (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate · ligand · 2 copies · chains M, H, L
  • U10 · Ubiquinone-10 · ligand · chains L, M
  • SPN · Speroidenone · ligand · chains M
  • FE · Fe (III) ion · metal · chains L, M
  • PO4 · Phosphate ion · ion · chains H, M
  • LDA · Lauryl dimethylamine-N-oxide · additive · 4 copies · chains H, M, L
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · chains L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6Z1J · Photosynthetic reaction center from rhodobacter sphaeroides strain rv lsp… · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.