MolNFT v2 · #173135 · protein
Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP co-crystallization with spheroidene
6Z1J: “Photosynthetic Reaction Center From Rhodobacter Sphaeroides strain RV LSP co-crystallization with spheroidene”. X-ray diffraction at 2.1, 8 ligands (UNL, BCL, BPH). MolNFT v2 #173135 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6Z1J
- Type
- protein
- Length
- 823 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- Rhodobacter sphaeroides
- UniProt
- P0C0Y7, P0C0Y8, P0C0Y9
- Ligands
- UNL, BCL, BPH, NKP, U10, SPN, FE, PO4
Structure
x-ray diffraction · resolution 2.1 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 241 | — | P0C0Y7 |
| L | — | protein | 281 | — | P0C0Y8 |
| M | — | protein | 301 | — | P0C0Y9 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 5 copies · chains L, M, H
- BCL · Bacteriochlorophyll A · ligand · 4 copies · chains L, M
- BPH · Bacteriopheophytin A · ligand · 2 copies · chains L, M
- NKP · (2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoate · ligand · 2 copies · chains M, H, L
- U10 · Ubiquinone-10 · ligand · chains L, M
- SPN · Speroidenone · ligand · chains M
- FE · Fe (III) ion · metal · chains L, M
- PO4 · Phosphate ion · ion · chains H, M
- LDA · Lauryl dimethylamine-N-oxide · additive · 4 copies · chains H, M, L
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · chains L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z1J · Photosynthetic reaction center from rhodobacter sphaeroides strain rv lsp… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C0Y7
- Every structure of UniProt P0C0Y8
- Every structure of UniProt P0C0Y9
- Elsewhere: RCSB PDB 6Z1J · PDBe 6Z1J · UniProt P0C0Y7 · UniProt P0C0Y8 · UniProt P0C0Y9
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