MolNFT v2 · #172208 · protein
Split gene transketolase, active alpha2beta2 heterotetramer
6YAK: “Split gene transketolase, active alpha2beta2 heterotetramer”. X-ray diffraction at 1.34, 5 ligands (MLT, LMR, 8EL). MolNFT v2 #172208 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YAK
- Type
- protein
- Length
- 1,186 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.34
- Source
- Carboxydothermus hydrogenoformans
- Ligands
- MLT, LMR, 8EL, CA, CL
Structure
x-ray diffraction · resolution 1.34 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| AAA, CCC | — | protein | 282 | — | — |
| BBB, DDD | — | protein | 311 | — | — |
Ligands and binding sites
- MLT · D-malate · ligand · 11 copies · chains AAA, BBB, CCC
- LMR · (2S)-2-hydroxybutanedioic acid · ligand · 5 copies · chains AAA, DDD
- 8EL · 2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2H-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate · ligand · 2 copies · chains AAA, DDD, BBB, CCC
- CA · Calcium ion · metal · 4 copies · chains AAA, CCC
- CL · Chloride ion · ion · 4 copies · chains AAA, BBB, CCC, DDD
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YAK · PDBe 6YAK
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