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MolNFT v2 · #172083 · protein

Pseudomonas stutzeri nitrous oxide reductase mutant, H129A

6Y6Y: “Pseudomonas stutzeri nitrous oxide reductase mutant, H129A”. X-ray diffraction at 1.67, 5 ligands (CUA, NA, ZN). MolNFT v2 #172083 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6Y6Y
Type
protein
Length
1,156 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.67
Source
Pseudomonas stutzeri
UniProt
P19573
Ligands
CUA, NA, ZN, CA, CL

Structure

x-ray diffraction · resolution 1.67 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein570—P19573
B—protein586—P19573

Ligands and binding sites

  • CUA · Dinuclear copper ion · ligand · 2 copies · chains A, B
  • NA · Sodium ion · metal · 2 copies · chains A, B
  • ZN · Zinc ion · metal · chains A
  • CA · Calcium ion · metal · chains B
  • CL · Chloride ion · ion · 2 copies · chains A, B
  • B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6Y6Y · Pseudomonas stutzeri nitrous oxide reductase mutant, H129A · the same entry in another collection · chain A against A, TM-score 1.00
  • P19573 · AlphaFold monomer V2.0 prediction for nitrous-oxide reductase (P19573) · a predicted model of the same protein · chain A against A, TM-score 1.00

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