MolNFT v2 · #169438 · protein
TTLL6 bound to gamma-elongation analog
6VZV: “TTLL6 bound to gamma-elongation analog”. X-ray diffraction at 2.33, 4 ligands (S3A, ADP, S37). MolNFT v2 #169438 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VZV
- Type
- protein
- Length
- 1,647 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.33
- Source
- Mus musculus
- UniProt
- A4Q9E8
- Ligands
- S3A, ADP, S37, MG
Structure
x-ray diffraction · resolution 2.33 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 404 | — | A4Q9E8 |
| C | — | protein | 405 | — | A4Q9E8 |
| D | — | protein | 403 | — | A4Q9E8 |
| I | — | protein | 15 | — | — |
| J | — | protein | 16 | — | — |
Ligands and binding sites
- S3A · (2~{S})-2-[[[(3~{R})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-phosphonooxy-phosphoryl]methyl]pentanedioic acid · ligand · 4 copies · chains A, C, B, D
- ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
- S37 · (2~{S})-2-[[[(3~{S})-3-acetamido-4-oxidanyl-4-oxidanylidene-butyl]-oxidanyl-phosphoryl]methyl]pentanedioic acid · ligand · 2 copies · chains A, D
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D
- GOL · Glycerol · additive · 32 copies · chains A, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6VZV · TTLL6 bound to gamma-elongation analog · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4Q9E8
- Elsewhere: RCSB PDB 6VZV · PDBe 6VZV · UniProt A4Q9E8
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