MolNFT v2 · #166250 · protein
Neuropilin2-b1 domain in a complex with the C-terminal VEGFB167 peptide
6TDB: “Neuropilin2-b1 domain in a complex with the C-terminal VEGFB167 peptide”. X-ray diffraction at 2.45, 1 ligand (ACE). MolNFT v2 #166250 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6TDB
- Type
- protein
- Length
- 641 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.45
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- O60462
- Ligands
- ACE
Structure
x-ray diffraction · resolution 2.45 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 158 | — | O60462 |
| B, C | — | protein | 157 | — | O60462 |
| D | — | protein | 159 | — | O60462 |
| F | — | protein | 5 | — | — |
| J | — | protein | 2 | — | — |
| K | — | protein | 3 | — | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains B, F
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60462
- Elsewhere: RCSB PDB 6TDB · PDBe 6TDB · UniProt O60462
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