MolNFT v2 · #165806 · protein

Crystal structure of CYP124 in complex with cholest-4-en-3-one

6T0F: “Crystal structure of CYP124 in complex with cholest-4-en-3-one”. X-ray diffraction at 1.65, 2 ligands (HEM, K2B). MolNFT v2 #165806 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6T0F
Type: protein
Length: 1,722 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.65
Source: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
UniProt: P9WPP3
Ligands: HEM, K2B

Structure

x-ray diffraction · resolution 1.65 · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	—	protein	431	—	P9WPP3
B, C	—	protein	430	—	P9WPP3

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, B, C, D
K2B · (8alpha,9beta)-cholest-4-en-3-one · ligand · 4 copies · chains A, B, C, D
GOL · Glycerol · additive · 12 copies · chains A, D, B, C
PGE · Triethylene glycol · additive · 6 copies · chains A, B, C, D
MPO · 3[N-morpholino]propane sulfonic acid · additive · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6T0F · Crystal structure of CYP124 in complex with cholest-4-en-3-one · the same entry in another collection · chain D against D, TM-score 1.00
P9WPP3 · AlphaFold monomer V2.0 prediction for methyl-branched lipid omega- hydroxylase (P9WPP3) · a predicted model of the same protein · chain D against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P9WPP3
Elsewhere: RCSB PDB 6T0F · PDBe 6T0F · UniProt P9WPP3

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