MolNFT v2 · #165531 · protein
Structure of the pentameric ligand-gated ion channel ELIC in complex with a PAM nanobody
6SSI: “Structure of the pentameric ligand-gated ion channel ELIC in complex with a PAM nanobody”. X-ray diffraction at 2.59, 3 ligands (ABU, UMQ, CA). MolNFT v2 #165531 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6SSI
- Type
- protein
- Length
- 2,081 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.59
- Source
- Dickeya chrysanthemi; Lama glama
- UniProt
- P0C7B7
- Ligands
- ABU, UMQ, CA
Structure
x-ray diffraction · resolution 2.59 · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 303 | — | P0C7B7 |
| B | — | protein | 308 | — | P0C7B7 |
| C | — | protein | 307 | — | P0C7B7 |
| D | — | protein | 305 | — | P0C7B7 |
| E | — | protein | 304 | — | P0C7B7 |
| F, J | — | protein | 110 | — | — |
| G, I | — | protein | 111 | — | — |
| H | — | protein | 112 | — | — |
Ligands and binding sites
- ABU · Gamma-amino-butanoic acid · ligand · 5 copies · chains A, B, C, D, E
- UMQ · Undecyl-maltoside · ligand · 5 copies · chains A, B, C, D, E
- CA · Calcium ion · metal · 5 copies · chains A, B, C, D, E
- GOL · Glycerol · additive · 6 copies · chains A, E, B, C, D
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · 5 copies · chains A, B, C, D, E
- PG4 · Tetraethylene glycol · additive · 4 copies · chains B, C, D, E
- ACT · Acetate ion · additive · 2 copies · chains C, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6SSI · Structure of the pentameric ligand-gated ion channel elic in complex with a pam nanobody · the same entry in another collection · chain J against J, TM-score 1.00
- P0C7B7 · AlphaFold monomer V2.0 prediction for cys-loop ligand-gated ion channel (P0C7B7) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C7B7
- Elsewhere: RCSB PDB 6SSI · PDBe 6SSI · UniProt P0C7B7
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