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MolNFT v2 · #161416 · protein

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)acetic acid.

6PF9: “Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and…”. X-ray diffraction at 2.89, 4 ligands (NDP, UFP, OF7). MolNFT v2 #161416 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6PF9
Type
protein
Length
2,534 residues
Chains
5
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.89
Source
Cryptosporidium hominis
UniProt
A0A0S4TER9
Ligands
NDP, UFP, OF7, SO4

Structure

x-ray diffraction · resolution 2.89 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B, C, D—protein507—A0A0S4TER9
E—protein506—A0A0S4TER9

Ligands and binding sites

  • NDP · Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate · ligand · 5 copies · chains A, B, C, D, E
  • UFP · 5-fluoro-2'-deoxyuridine-5'-monophosphate · ligand · 5 copies · chains A, B, C, D, E
  • OF7 · [2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino) phenyl]acetic acid · ligand · 5 copies · chains A, B, C, D, E
  • SO4 · Sulfate ion · ion · 5 copies · chains A, B, C, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6PF9 · Crystal structure of ts-DHFR from cryptosporidium hominis in complex with NADPH, fdump… · the same entry in another collection · chain A against A, TM-score 1.00

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