MolNFT v2 · #159134 · protein
Crystal Structure of Medicago truncatula Agmatine Iminohydrolase (Deiminase) in Complex with 6-aminohexanamide
6NIC: “Crystal Structure of Medicago truncatula Agmatine Iminohydrolase (Deiminase) in Complex with 6-aminohexanamide”. X-ray diffraction at 2.2, 2 ligands (KQY, NA). MolNFT v2 #159134 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6NIC
- Type
- protein
- Length
- 1,430 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Medicago truncatula
- UniProt
- G7JT50
- Ligands
- KQY, NA
Structure
x-ray diffraction · resolution 2.2 · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 356 | — | G7JT50 |
| C | — | protein | 358 | — | G7JT50 |
| D | — | protein | 360 | — | G7JT50 |
Ligands and binding sites
- KQY · 6-aminohexanamide · ligand · 3 copies · chains A, C, D
- NA · Sodium ion · metal · 4 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A, B
- PGE · Triethylene glycol · additive · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6NIC · Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex… · the same entry in another collection · chain D against D, TM-score 1.00
- G7JT50 · AlphaFold monomer V2.0 prediction for agmatine deiminase (G7JT50) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G7JT50
- Elsewhere: RCSB PDB 6NIC · PDBe 6NIC · UniProt G7JT50
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