MolNFT v1 · #158043 · protein

Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide

6NIC: “Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide”. X-ray diffraction, 2 ligands (KQY, NA). MolNFT v1 #158043 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NIC
Type: protein
Length: 1,430 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: G7JT50
Ligands: KQY, NA

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	356	—	G7JT50
C	—	protein	358	—	G7JT50
D	—	protein	360	—	G7JT50

Ligands and binding sites

KQY · 6-aminohexanamide · ligand · 3 copies · chains A, C, D
NA · Sodium ion · metal · 4 copies · chains A, B, C, D
PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A, B
PGE · Triethylene glycol · additive · 2 copies · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6NIC · Crystal Structure of Medicago truncatula Agmatine Iminohydrolase (Deiminase) in Complex… · the same entry in another collection · chain D against D, TM-score 1.00
G7JT50 · AlphaFold monomer V2.0 prediction for agmatine deiminase (G7JT50) · a predicted model of the same protein · chain B against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G7JT50
Elsewhere: RCSB PDB 6NIC · PDBe 6NIC · UniProt G7JT50

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