MolNFT v2 · #158083 · protein
Diheteromeric NMDA receptor GluN1/GluN2A in the '1-Knuckle' conformation, in complex with glycine and glutamate, in the presence of 1 micromolar zinc chloride, and at pH 7.4
6MMK: “Diheteromeric NMDA receptor GluN1/GluN2A in the '1-Knuckle' conformation, in complex with glycine and…”. Electron microscopy at 6.08, 1 ligand (NAG). MolNFT v2 #158083 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MMK
- Type
- protein
- Length
- 3,122 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 6.08
- Source
- Rattus norvegicus
- UniProt
- P35439, Q00959
- Ligands
- NAG
Structure
electron microscopy · resolution 6.08 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 782 | — | P35439 |
| B | — | protein | 772 | — | Q00959 |
| C | — | protein | 790 | — | P35439 |
| D | — | protein | 778 | — | Q00959 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 40 copies · chains A, C, D, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6MMK · Diheteromeric NMDA receptor GLUN1/GLUN2A in the '1-knuckle' conformation, in complex with… · the same entry in another collection · chain D against D, TM-score 1.00
- Q00959 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, NMDA 2A (Q00959) · a predicted model of the same protein · chain D against A, TM-score 0.92
- P35439 · AlphaFold monomer V2.0 prediction for glutamate receptor ionotropic, NMDA 1 (P35439) · a predicted model of the same protein · chain C against A, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35439
- Every structure of UniProt Q00959
- Elsewhere: RCSB PDB 6MMK · PDBe 6MMK · UniProt P35439 · UniProt Q00959
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.