MolNFT v2 · #157277 · protein

Crystal structure of Z2B3 Fab in complex with influenza virus neuraminidase from A/Brevig Mission/1/1918 (H1N1)

6LXI: “Crystal structure of Z2B3 Fab in complex with influenza virus neuraminidase from A/Brevig Mission/1/1918…”. X-ray diffraction at 2.5, 5 ligands (NAG, BMA, MAN). MolNFT v2 #157277 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6LXI
Type: protein
Length: 1,627 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.5
Source: Homo sapiens; Influenza A virus (strain A/Brevig Mission/1/1918 H1N1)
UniProt: Q9IGQ6
Ligands: NAG, BMA, MAN, FUC, CA

Structure

x-ray diffraction · resolution 2.5 · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	—	protein	387	—	Q9IGQ6
H	—	protein	232	—	—
L	—	protein	211	—	—
C	—	protein	214	—	—
D	—	protein	196	—	—

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A, H, B, C
BMA · beta-D-mannopyranose · sugar · 2 copies · chains H, C
MAN · alpha-D-mannopyranose · sugar · 2 copies · chains H, C
FUC · alpha-L-fucopyranose · sugar · 2 copies · chains A, H, B, C
CA · Calcium ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6LXI · Crystal structure of Z2B3 Fab in complex with influenza virus neuraminidase from A/BREVIG… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9IGQ6
Elsewhere: RCSB PDB 6LXI · PDBe 6LXI · UniProt Q9IGQ6

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