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MolNFT v2 · #156810 · protein

Heteromeric amino acid transporter b0,+AT-rBAT complex bound with Arginine

6LI9: “Heteromeric amino acid transporter b0,+AT-rBAT complex bound with Arginine”. Electron microscopy at 2.3, 3 ligands (3PH, NAG, CA). MolNFT v2 #156810 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6LI9
Type
protein
Length
2,164 residues
Chains
4
Method
electron microscopy
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
2.3
Source
Homo sapiens
UniProt
Q07837, P82251
Ligands
3PH, NAG, CA

Structure

electron microscopy · resolution 2.3 · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, C—protein623—Q07837
B, D—protein459—P82251

Ligands and binding sites

  • 3PH · 1,2-diacyl-glycerol-3-sn-phosphate · ligand · 4 copies · chains A, B, C, D
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 20 copies · chains A, C
  • CA · Calcium ion · metal · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6LI9 · Heteromeric amino acid transporter B0,+AT-rbat complex bound with arginine · the same entry in another collection · chain A against A, TM-score 1.00
  • Q07837 · AlphaFold monomer V2.0 prediction for neutral and basic amino acid transport protein rbat… · a predicted model of the same protein · chain A against A, TM-score 0.96
  • P82251 · AlphaFold monomer V2.0 prediction for B(0,+)-type amino acid transporter 1 (P82251) · a predicted model of the same protein · chain B against A, TM-score 0.93

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