MolNFT v2 · #155661 · protein
Crystal structure of Oryza sativa TDC with PLP and tryptamine
6KHP: “Crystal structure of Oryza sativa TDC with PLP and tryptamine”. X-ray diffraction at 2.299, 3 ligands (PLP, TSS, CA). MolNFT v2 #155661 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6KHP
- Type
- protein
- Length
- 966 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.299
- Source
- Oryza sativa subsp. japonica
- UniProt
- Q6ZJK7
- Ligands
- PLP, TSS, CA
Structure
x-ray diffraction · resolution 2.299 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 490 | — | Q6ZJK7 |
| B | — | protein | 476 | — | Q6ZJK7 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · 2 copies · chains A, B
- TSS · 2-(1H-indol-3-yl)ethanamine · ligand · chains A, B
- CA · Calcium ion · metal · 4 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6ZJK7
- Elsewhere: RCSB PDB 6KHP · PDBe 6KHP · UniProt Q6ZJK7
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