MolNFT v2 · #155161 · protein + DNA
Human nucleosome core particle with H2A.X S139E variant
6K1K: “Human nucleosome core particle with H2A.X S139E variant”. X-ray diffraction at 2.2, 3 ligands (MN, K, CL). MolNFT v2 #155161 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6K1K
- Type
- protein + DNA
- Length
- 1,071 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Homo sapiens
- UniProt
- P68431, P62805, P16104, P06899
- Ligands
- MN, K, CL
Structure
x-ray diffraction · resolution 2.2 · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 98 | — | P68431 |
| B | — | protein | 87 | — | P62805 |
| C | — | protein | 111 | — | P16104 |
| D | — | protein | 96 | — | P06899 |
| E | — | protein | 97 | — | P68431 |
| F | — | protein | 81 | — | P62805 |
| G | — | protein | 114 | — | P16104 |
| H | — | protein | 97 | — | P06899 |
| I | — | dna | 145 | — | — |
| J | — | dna | 145 | — | — |
Ligands and binding sites
- MN · Manganese (II) ion · metal · 33 copies · chains H, I, J
- K · Potassium ion · metal · 2 copies · chains I, J
- CL · Chloride ion · ion · 2 copies · chains C, D, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P68431
- Every structure of UniProt P62805
- Every structure of UniProt P16104
- Every structure of UniProt P06899
- Elsewhere: RCSB PDB 6K1K · PDBe 6K1K · UniProt P68431 · UniProt P62805 · UniProt P16104 · UniProt P06899
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