MolNFT v2 · #154923 · protein
structure of CavAb in complex with efonidipine
6JUH: “structure of CavAb in complex with efonidipine”. X-ray diffraction at 3, 5 ligands (MC3, PX4, G3P). MolNFT v2 #154923 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6JUH
- Type
- protein
- Length
- 1,050 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3
- Source
- Arcobacter butzleri RM4018
- UniProt
- A8EVM5
- Ligands
- MC3, PX4, G3P, C9X, CA
Structure
x-ray diffraction · resolution 3 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D | — | protein | 263 | — | A8EVM5 |
| C | — | protein | 261 | — | A8EVM5 |
Ligands and binding sites
- MC3 · 1,2-dimyristoyl-rac-glycero-3-phosphocholine · ligand · 4 copies · chains A, B, C, D
- PX4 · 1,2-dimyristoyl-sn-glycero-3-phosphocholine · ligand · 4 copies · chains A, D, B, C
- G3P · Sn-glycerol-3-phosphate · ligand · 4 copies · chains A, B, C, D
- C9X · 2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate · ligand · chains A, B, D
- CA · Calcium ion · metal · 2 copies · chains B, A, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6JUH · Structure of cavab in complex with efonidipine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8EVM5
- Elsewhere: RCSB PDB 6JUH · PDBe 6JUH · UniProt A8EVM5
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