MolNFT v2 · #151788 · protein
Crystal structure of Mycobacterium tuberculosis phosphatidylinositol phosphate synthase (PgsA1) in complex with manganese and citrate
6H5A: “Crystal structure of Mycobacterium tuberculosis phosphatidylinositol phosphate synthase (PgsA1) in complex…”. X-ray diffraction at 1.88, 3 ligands (LFA, MN, SO4). MolNFT v2 #151788 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6H5A
- Type
- protein
- Length
- 416 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.88
- Source
- Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
- UniProt
- P9WPG7
- Ligands
- LFA, MN, SO4
Structure
x-ray diffraction · resolution 1.88 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 207 | — | P9WPG7 |
| B | — | protein | 209 | — | P9WPG7 |
Ligands and binding sites
- LFA · Eicosane · ligand · 4 copies · chains A, B
- MN · Manganese (II) ion · metal · 7 copies · chains A, B
- SO4 · Sulfate ion · ion · chains A, B
- FLC · Citrate anion · additive · 3 copies · chains A, B
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 3 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · 2 copies · chains B, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H5A · Crystal structure of mycobacterium tuberculosis phosphatidylinositol phosphate synthase… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WPG7 · AlphaFold monomer V2.0 prediction for phosphatidylinositol phosphate synthase (P9WPG7) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WPG7
- Elsewhere: RCSB PDB 6H5A · PDBe 6H5A · UniProt P9WPG7
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