MolNFT v2 · #148853 · protein + DNA
Complex of XLF and heterodimer Ku bound to DNA
6ERG: “Complex of XLF and heterodimer Ku bound to DNA”. X-ray diffraction at 2.9, 1 ligand (SO4). MolNFT v2 #148853 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ERG
- Type
- protein + DNA
- Length
- 2,190 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.9
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- P12956, P13010, Q9H9Q4
- Ligands
- SO4
Structure
x-ray diffraction · resolution 2.9 · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 501 | — | P12956 |
| B | — | protein | 531 | — | P13010 |
| C, F | — | protein | 7 | — | Q9H9Q4 |
| D | — | protein | 503 | — | P12956 |
| E | — | protein | 536 | — | P13010 |
| H, K | — | dna | 21 | — | — |
| M | — | dna | 32 | — | — |
| R | — | dna | 31 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A, B, D, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ERG · Complex of xlf and heterodimer ku bound to DNA · the same entry in another collection · chain R against R, TM-score 1.00
- P12956 · AlphaFold monomer V2.0 prediction for X-ray repair cross- complementing protein 6 (P12956) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12956
- Every structure of UniProt P13010
- Every structure of UniProt Q9H9Q4
- Elsewhere: RCSB PDB 6ERG · PDBe 6ERG · UniProt P12956 · UniProt P13010 · UniProt Q9H9Q4
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