MolNFT v2 · #147158 · protein + DNA
Cryo-EM structure of RAG in complex with 12-RSS substrate DNA
6DBW: “Cryo-EM structure of RAG in complex with 12-RSS substrate DNA”. Electron microscopy at 4.7, 2 ligands (CA, ZN). MolNFT v2 #147158 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6DBW
- Type
- protein + DNA
- Length
- 2,031 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.7
- Source
- Danio rerio; Escherichia coli; SYNTHETIC CONSTRUCT
- UniProt
- P0AEX9, O13033, Q1RLW7
- Ligands
- CA, ZN
Structure
electron microscopy · resolution 4.7 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 614 | — | P0AEX9, O13033 |
| B, D | — | protein | 351 | — | Q1RLW7 |
| C | — | protein | 615 | — | P0AEX9, O13033 |
| E | — | dna | 50 | — | — |
| F | — | dna | 50 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6DBW · Cryo-EM structure of rag in complex with 12-rss substrate DNA · the same entry in another collection · chain F against F, TM-score 1.00
- O13033 · AlphaFold monomer V2.0 prediction for V(D)J recombination-activating protein 1 (O13033) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEX9
- Every structure of UniProt O13033
- Every structure of UniProt Q1RLW7
- Elsewhere: RCSB PDB 6DBW · PDBe 6DBW · UniProt P0AEX9 · UniProt O13033 · UniProt Q1RLW7
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