MolNFT v2 · #144472 · protein + DNA
BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry
6B40: “BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry”. Electron microscopy at 4.3, 2 ligands (CA, ZN). MolNFT v2 #144472 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B40
- Type
- protein + DNA
- Length
- 1,938 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 4.3
- Source
- Branchiostoma belcheri; SYNTHETIC CONSTRUCT
- UniProt
- A0A185KID9, A0A185KIE0
- Ligands
- CA, ZN
Structure
electron microscopy · resolution 4.3 · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 553 | — | A0A185KID9 |
| B, F | — | dna | 25 | — | — |
| C, G | — | dna | 13 | — | — |
| D, H | — | dna | 12 | — | — |
| M, N | — | protein | 366 | — | A0A185KIE0 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B, E, F
- ZN · Zinc ion · metal · 2 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B40 · Bbragl-3'TIR synaptic complex with nicked DNA refined with C2 symmetry · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A185KID9
- Every structure of UniProt A0A185KIE0
- Elsewhere: RCSB PDB 6B40 · PDBe 6B40 · UniProt A0A185KID9 · UniProt A0A185KIE0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.