MolNFT v1 · #143587 · protein + DNA
Bbragl-3'TIR synaptic complex with nicked DNA refined with C2 symmetry
6B40: “Bbragl-3'TIR synaptic complex with nicked DNA refined with C2 symmetry”. Electron microscopy, 2 ligands (CA, ZN). MolNFT v1 #143587 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6B40
- Type
- protein + DNA
- Length
- 1,938 residues
- Chains
- 10
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A185KID9, A0A185KIE0
- Ligands
- CA, ZN
Structure
electron microscopy · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E | — | protein | 553 | — | A0A185KID9 |
| B, F | — | dna | 25 | — | — |
| C, G | — | dna | 13 | — | — |
| D, H | — | dna | 12 | — | — |
| M, N | — | protein | 366 | — | A0A185KIE0 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B, E, F
- ZN · Zinc ion · metal · 2 copies · chains A, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6B40 · BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A185KID9
- Every structure of UniProt A0A185KIE0
- Elsewhere: RCSB PDB 6B40 · PDBe 6B40 · UniProt A0A185KID9 · UniProt A0A185KIE0
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