MolNFT v2 · #140704 · protein

Crystal Structure of Transketolase in complex with TPP_V and fructose-6-phosphate from Pichia Stipitis

5XRV: “Crystal Structure of Transketolase in complex with TPP_V and fructose-6-phosphate from Pichia Stipitis”. X-ray diffraction at 1.4, 4 ligands (F6R, 8EF, TPP). MolNFT v2 #140704 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5XRV
Type: protein
Length: 675 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.4
Source: Scheffersomyces stipitis CBS 6054
UniProt: P34736
Ligands: F6R, 8EF, TPP, CA

Structure

x-ray diffraction · resolution 1.4 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	675	—	P34736

Ligands and binding sites

F6R · Fructose -6-phosphate · ligand · chains A
8EF · 2-[(5S)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methylidene-1,3-thiazolidin-5-yl]ethyl phosphono hydrogen phosphate · ligand · chains A
TPP · Thiamine diphosphate · ligand · chains A
CA · Calcium ion · metal · chains A
PEG · Di(hydroxyethyl)ether · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5XRV · Crystal structure of transketolase in complex with TPP_V and fructose- 6-phosphate from… · the same entry in another collection · chain A against A, TM-score 1.00
P34736 · AlphaFold monomer V2.0 prediction for transketolase (P34736) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P34736
Elsewhere: RCSB PDB 5XRV · PDBe 5XRV · UniProt P34736

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