MolNFT v2 · #136853 · protein + DNA
DNA polymerase beta nick complex with imidodiphosphate
5UGO: “DNA polymerase beta nick complex with imidodiphosphate”. X-ray diffraction at 1.897, 2 ligands (2PN, CA). MolNFT v2 #136853 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5UGO
- Type
- protein + DNA
- Length
- 358 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.897
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- P06746
- Ligands
- 2PN, CA
Structure
x-ray diffraction · resolution 1.897 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| T | — | dna | 16 | — | — |
| P | — | dna | 11 | — | — |
| D | — | dna | 5 | — | — |
| A | — | protein | 326 | — | P06746 |
Ligands and binding sites
- 2PN · Imidodiphosphoric acid · ligand · chains P, A
- CA · Calcium ion · metal · 2 copies · chains P, A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06746
- Elsewhere: RCSB PDB 5UGO · PDBe 5UGO · UniProt P06746
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