MolNFT v2 · #129914 · protein

Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 (K45E mutant) N-OB domain

5OMC: “Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 (K45E mutant) N-OB domain”. X-ray diffraction at 2.38, 1 ligand (CL). MolNFT v2 #129914 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5OMC
Type: protein
Length: 435 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.38
Source: Kluyveromyces lactis; Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
UniProt: P22336, Q6CUV9
Ligands: CL

Structure

x-ray diffraction · resolution 2.38 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	121	—	P22336
B	—	protein	120	—	P22336
C, D	—	protein	97	—	Q6CUV9

Ligands and binding sites

CL · Chloride ion · ion · 3 copies · chains B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OMC · Crystal structure of K. lactis DDC2 N-terminus in complex with S. cerevisiae RFA1 (K45E… · the same entry in another collection · chain A against A, TM-score 1.00
P22336 · AlphaFold monomer V2.0 prediction for replication factor a protein 1 (P22336) · a predicted model of the same protein · chain A against A, TM-score 0.98
Q6CUV9 · AlphaFold monomer V2.0 prediction for DNA damage checkpoint protein LCD1 (Q6CUV9) · a predicted model of the same protein · chain C against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P22336
Every structure of UniProt Q6CUV9
Elsewhere: RCSB PDB 5OMC · PDBe 5OMC · UniProt P22336 · UniProt Q6CUV9

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