MolNFT v1 · #129503 · protein
Crystal structure of K. lactis DDC2 N-terminus in complex with S. cerevisiae RFA1 (K45E mutant) N-ob domain
5OMC: “Crystal structure of K. lactis DDC2 N-terminus in complex with S. cerevisiae RFA1 (K45E mutant) N-ob domain”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #129503 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5OMC
- Type
- protein
- Length
- 435 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P22336, Q6CUV9
- Ligands
- CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 121 | — | P22336 |
| B | — | protein | 120 | — | P22336 |
| C, D | — | protein | 97 | — | Q6CUV9 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OMC · Crystal structure of K. lactis Ddc2 N-terminus in complex with S. cerevisiae Rfa1 (K45E… · the same entry in another collection · chain A against A, TM-score 1.00
- P22336 · AlphaFold monomer V2.0 prediction for replication factor a protein 1 (P22336) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q6CUV9 · AlphaFold monomer V2.0 prediction for DNA damage checkpoint protein LCD1 (Q6CUV9) · a predicted model of the same protein · chain C against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P22336
- Every structure of UniProt Q6CUV9
- Elsewhere: RCSB PDB 5OMC · PDBe 5OMC · UniProt P22336 · UniProt Q6CUV9
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