MolNFT v2 · #127402 · protein

Structures of DHBN domain of human BLM helicase

5MK5: “Structures of DHBN domain of human BLM helicase”. X-ray diffraction at 2.16, 2 ligands (K, IOD). MolNFT v2 #127402 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MK5
Type: protein
Length: 203 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.16
Source: Homo sapiens
UniProt: P54132
Ligands: K, IOD

Structure

x-ray diffraction · resolution 2.16 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	51	—	P54132
B, C	—	protein	52	—	P54132
D	—	protein	48	—	P54132

Ligands and binding sites

K · Potassium ion · metal · 3 copies · chains A, C
IOD · Iodide ion · ion · 20 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MK5 · Structures of dhbn domain of human blm helicase · the same entry in another collection · chain D against D, TM-score 1.00
P54132 · AlphaFold monomer V2.0 prediction for bloom syndrome protein (P54132) · a predicted model of the same protein · chain D against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54132
Elsewhere: RCSB PDB 5MK5 · PDBe 5MK5 · UniProt P54132

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