MolNFT v2 · #125450 · protein
Crystal structure of USP7 catalytic domain [L299A] mutant in complex with ubiquitin
5KYF: “Crystal structure of USP7 catalytic domain [L299A] mutant in complex with ubiquitin”. X-ray diffraction at 1.45. MolNFT v2 #125450 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5KYF
- Type
- protein
- Length
- 416 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.45
- Source
- Homo sapiens
- UniProt
- Q93009, P0CG47
Structure
x-ray diffraction · resolution 1.45 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 340 | — | Q93009 |
| C | — | protein | 76 | — | P0CG47 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5KYF · Crystal structure of USP7 catalytic domain [L299A] mutant in complex with ubiquitin · the same entry in another collection · chain B against B, TM-score 1.00
- Q93009 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 7 (Q93009) · a predicted model of the same protein · chain B against A, TM-score 0.97
- P0CG47 · AlphaFold monomer V2.0 prediction for polyubiquitin-B (P0CG47) · a predicted model of the same protein · chain C against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93009
- Every structure of UniProt P0CG47
- Elsewhere: RCSB PDB 5KYF · PDBe 5KYF · UniProt Q93009 · UniProt P0CG47
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