MolNFT v2 · #118618 · protein
TRIM25 RING domain in complex with Ubc13-Ub conjugate
5EYA: “TRIM25 RING domain in complex with Ubc13-Ub conjugate”. X-ray diffraction at 2.4, 1 ligand (ZN). MolNFT v2 #118618 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EYA
- Type
- protein
- Length
- 612 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.4
- Source
- Homo sapiens
- UniProt
- P61088, Q59GW5, P0CG47
- Ligands
- ZN
Structure
x-ray diffraction · resolution 2.4 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 149 | — | P61088 |
| F | — | protein | 76 | — | Q59GW5 |
| G | — | protein | 86 | — | Q59GW5 |
| C, D | — | protein | 76 | — | P0CG47 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5EYA · TRIM25 ring domain in complex with UBC13-ub conjugate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P61088
- Every structure of UniProt Q59GW5
- Every structure of UniProt P0CG47
- Elsewhere: RCSB PDB 5EYA · PDBe 5EYA · UniProt P61088 · UniProt Q59GW5 · UniProt P0CG47
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