MolNFT v2 · #116914 · protein
Fc Heterodimer Design 8.1 L368V/Y407A + T366V/K409F
5DJC: “Fc Heterodimer Design 8.1 L368V/Y407A + T366V/K409F”. X-ray diffraction at 2.1, 6 ligands (NAG, MAN, BMA). MolNFT v2 #116914 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DJC
- Type
- protein
- Length
- 853 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.1
- Source
- Homo sapiens; SYNTHETIC CONSTRUCT
- UniProt
- P01857
- Ligands
- NAG, MAN, BMA, GAL, FUC, IOD
Structure
x-ray diffraction · resolution 2.1 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | — | protein | 207 | — | P01857 |
| B | — | protein | 206 | — | P01857 |
| C, F | — | protein | 13 | — | — |
| E | — | protein | 207 | — | P01857 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 12 copies · chains A, B, D, E
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A, B, D, E
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains A, B, D, E
- GAL · beta-D-galactopyranose · sugar · 4 copies · chains A, B, D, E
- FUC · alpha-L-fucopyranose · sugar · 4 copies · chains D, E
- IOD · Iodide ion · ion · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DJC · Fc heterodimer design 8.1 L368V/Y407A + T366V/K409F · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01857
- Elsewhere: RCSB PDB 5DJC · PDBe 5DJC · UniProt P01857
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