MolNFT v1 · #99817 · protein
Crystal structure of a trap periplasmic solute binding protein from rhodoferax ferrireducens (RFER_1840), target efi-510211, with bound malonate, space group I422
4MEV · Trap dicarboxylate transporter-dctp subunit: “Crystal structure of a trap periplasmic solute binding protein from rhodoferax ferrireducens (RFER_1840)…”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #99817 on…
- PDB
- 4MEV
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trap dicarboxylate transporter-dctp subunit
- UniProt
- Q21XD7
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trap dicarboxylate transporter-dctp subunit | protein | 311 | 51% helix, 16% strand | Q21XD7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.34 | 0.76 | 15 | empty |
Compared structures
- 4MEV · Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax… · the same entry in another collection · chain A against A, TM-score 1.00
- Q21XD7 · AlphaFold monomer V2.0 prediction for solute-binding protein RFER_1840 (Q21XD7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q21XD7
- Elsewhere: RCSB PDB 4MEV · PDBe 4MEV · UniProt Q21XD7
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