MolNFT v1 · #99608 · protein
1.43 ångström resolution crystal structure of cell division protein ftsz (ftsz) from staphylococcus epidermidis RP62A in complex with GDP
4M8I: “1.43 ångström resolution crystal structure of cell division protein ftsz (ftsz) from staphylococcus…”. X-ray diffraction, 2 ligands (GDP, SO4), 2 pockets (best druggability 0.60). MolNFT v1 #99608 on GenesisL1: 3D structure, binding…
- PDB
- 4M8I
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division protein ftsz
- UniProt
- Q5HQ06
- Ligands
- GDP, SO4
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell division protein ftsz | protein | 311 | 45% helix, 23% strand | Q5HQ06 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.60 | 0.81 | 40 | GDP |
| 2 | 199 | 0.57 | 0.80 | 31 | empty |
Compared structures
- 4M8I · 1.43 Angstrom resolution crystal structure of cell division protein FtsZ (ftsZ) from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5HQ06 · AlphaFold monomer V2.0 prediction for cell division protein ftsz (Q5HQ06) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5HQ06
- Elsewhere: RCSB PDB 4M8I · PDBe 4M8I · UniProt Q5HQ06
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