Research workbench
1.43 ångström resolution crystal structure of cell division protein ftsz (ftsz) from staphylococcus epidermidis RP62A in complex with GDP
Analyse 1.43 ångström resolution crystal structure of cell division protein ftsz (ftsz)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4M8I
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division protein ftsz
- UniProt
- Q5HQ06
- Ligands
- GDP, SO4
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell division protein ftsz | protein | 311 | 45% helix, 23% strand | Q5HQ06 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 234 | 0.60 | 0.81 | 40 | GDP |
| 2 | 199 | 0.57 | 0.80 | 31 | empty |
Compared structures
- 4M8I · 1.43 Angstrom resolution crystal structure of cell division protein FtsZ (ftsZ) from… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5HQ06 · AlphaFold monomer V2.0 prediction for cell division protein ftsz (Q5HQ06) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5HQ06
- Elsewhere: RCSB PDB 4M8I · PDBe 4M8I · UniProt Q5HQ06
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