MolNFT v1 · #92532 · protein

Crystal structure of the ring domain of RNF168

4GB0 · E3 ubiquitin-protein ligase RNF168: “Crystal structure of the ring domain of RNF168”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #92532 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4GB0
Type: protein
Length: 91 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: E3 ubiquitin-protein ligase RNF168
EC: 6.3.2.-
UniProt: Q8IYW5
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	E3 ubiquitin-protein ligase RNF168 (EC 6.3.2.-)	protein	91	46% helix, 11% strand	Q8IYW5

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A
MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

4GB0 · Crystal Structure of the RING domain of RNF168 · the same entry in another collection · chain A against A, TM-score 1.00
Q8IYW5 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RNF168 (Q8IYW5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IYW5
Elsewhere: RCSB PDB 4GB0 · PDBe 4GB0 · UniProt Q8IYW5

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