MolNFT v1 · #86577 · protein

Structure of the ARL6 BBS3 small GTPase from trypanosoma brucei with bound nucleotide analogue gppnp

4BAS · ADP-ribosylation factor, putative (small GTPase, putative): “Structure of the ARL6 BBS3 small GTPase from trypanosoma brucei with bound nucleotide analogue gppnp”. X-ray diffraction, 3 ligands (GNP, MG, SO4), 1 pocket (best…

PDB: 4BAS
Type: protein
Length: 172 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ADP-ribosylation factor, putative (small GTPase, putative)
EC: 3.6.5.2
UniProt: C9ZVV9
Ligands: GNP, MG, SO4
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ADP-ribosylation factor, putative (small GTPase, putative) (EC 3.6.5.2)	protein	172	38% helix, 26% strand	C9ZVV9

Ligands and binding sites

GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
MG · Magnesium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.41	0.77	25	GNP, MG

Compared structures

4BAS · Structure of the Arl6 BBS3 Small GTPase from Trypanosoma brucei with bound nucleotide… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9ZVV9
Elsewhere: RCSB PDB 4BAS · PDBe 4BAS · UniProt C9ZVV9

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