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Structure of the ARL6 BBS3 small GTPase from trypanosoma brucei with bound nucleotide analogue gppnp

Analyse Structure of the ARL6 BBS3 small GTPase from trypanosoma brucei with bound… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4BAS
Type: protein
Length: 172 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ADP-ribosylation factor, putative (small GTPase, putative)
EC: 3.6.5.2
UniProt: C9ZVV9
Ligands: GNP, MG, SO4
Pockets: 1 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ADP-ribosylation factor, putative (small GTPase, putative) (EC 3.6.5.2)	protein	172	38% helix, 26% strand	C9ZVV9

Ligands and binding sites

GNP · Phosphoaminophosphonic acid-guanylate ester · ligand · chains A
MG · Magnesium ion · metal · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.41	0.77	25	GNP, MG

Compared structures

4BAS · Structure of the Arl6 BBS3 Small GTPase from Trypanosoma brucei with bound nucleotide… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9ZVV9
Elsewhere: RCSB PDB 4BAS · PDBe 4BAS · UniProt C9ZVV9

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