MolNFT v1 · #86528 · protein
High resolution structure for family 3A carbohydrate binding module from the cipa scaffolding of clostridium thermocellum
4B9F · Cellulosomal-scaffolding protein a: “High resolution structure for family 3A carbohydrate binding module from the cipa scaffolding of clostridium…”. X-ray diffraction, 2 ligands (CA, SO4), 2 pockets (best druggability 0.53). MolNFT…
- PDB
- 4B9F
- Type
- protein
- Length
- 304 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellulosomal-scaffolding protein a
- UniProt
- Q06851
- Ligands
- CA, SO4
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cellulosomal-scaffolding protein a | protein | 152 | 4% helix, 57% strand | Q06851 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.53 | 0.82 | 28 | empty |
| 2 | 123 | 0.48 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 663 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 4B9F · High resolution structure for family 3a carbohydrate binding module from the cipA… · the same entry in another collection · chain A against A, TM-score 1.00
- Q06851 · AlphaFold monomer V2.0 prediction for cellulosomal-scaffolding protein a (Q06851) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06851
- Elsewhere: RCSB PDB 4B9F · PDBe 4B9F · UniProt Q06851
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