Research workbench
High resolution structure for family 3A carbohydrate binding module from the cipa scaffolding of clostridium thermocellum
Analyse High resolution structure for family 3A carbohydrate binding module from the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4B9F
- Type
- protein
- Length
- 304 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellulosomal-scaffolding protein a
- UniProt
- Q06851
- Ligands
- CA, SO4
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Cellulosomal-scaffolding protein a | protein | 152 | 4% helix, 57% strand | Q06851 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 122 | 0.53 | 0.82 | 28 | empty |
| 2 | 123 | 0.48 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 663 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 4B9F · High resolution structure for family 3a carbohydrate binding module from the cipA… · the same entry in another collection · chain A against A, TM-score 1.00
- Q06851 · AlphaFold monomer V2.0 prediction for cellulosomal-scaffolding protein a (Q06851) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06851
- Elsewhere: RCSB PDB 4B9F · PDBe 4B9F · UniProt Q06851
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