MolNFT v1 · #86424 · protein
A. fumigatus ornithine hydroxylase (sida), re-oxidised state bound to NADP and ornithine
4B67 · L-ornithine N5 monooxygenase: “A. fumigatus ornithine hydroxylase (sida), re-oxidised state bound to NADP and ornithine”. X-ray diffraction, 4 ligands (ORN, FAD, NAP), 5 pockets (best druggability 0.82). MolNFT v1 #86424 on…
- PDB
- 4B67
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-ornithine N5 monooxygenase
- UniProt
- Q5SE95
- Ligands
- ORN, FAD, NAP, SO4
- Pockets
- 5 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-ornithine N5 monooxygenase | protein | 455 | 34% helix, 22% strand | Q5SE95 |
Ligands and binding sites
- ORN · L-ornithine · ligand · 3 copies · chains A
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- SO4 · Sulfate ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1082 | 0.82 | 0.83 | 91 | FAD, NAP, ORN |
| 2 | 99 | 0.46 | 0.80 | 24 | empty |
| 3 | 97 | 0.38 | 0.75 | 15 | GOL |
| 4 | 61 | 0.37 | 0.79 | 15 | empty |
| 5 | 74 | 0.31 | 0.74 | 19 | empty |
Compared structures
- 4B67 · A. fumigatus ornithine hydroxylase (SidA), re-oxidised state bound to NADP and ornithine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SE95
- Elsewhere: RCSB PDB 4B67 · PDBe 4B67 · UniProt Q5SE95
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