MolNFT v1 · #8388 · protein
High-resolution crystal structure of erythrina cristagalli lectin in complex with lactose
1GZC · Erythrina crista-galli lectin: “High-resolution crystal structure of erythrina cristagalli lectin in complex with lactose”. X-ray diffraction, 4 ligands (BGC, GAL, MN), 1 pocket (best druggability 0.34). MolNFT v1 #8388 on…
- PDB
- 1GZC
- Type
- protein
- Length
- 239 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Erythrina crista-galli lectin
- Ligands
- BGC, GAL, MN, CA
- Pockets
- 1 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Erythrina crista-galli lectin | protein | 239 | 4% helix, 44% strand | — |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
- MN · Manganese (II) ion · metal · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.34 | 0.78 | 15 | empty |
Compared structures
- 1GZC · High-Resolution crystal structure of Erythrina cristagalli lectin in complex with lactose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1GZC · PDBe 1GZC
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