MolNFT v1 · #80794 · protein
Ferb - flavoenzyme NAD(P)H:(ACCEPTOR) oxidoreductase (ferb) from paracoccus denitrificans
3U7R · NADPH-dependent FMN reductase: “Ferb - flavoenzyme NAD(P)H:(ACCEPTOR) oxidoreductase (ferb) from paracoccus denitrificans”. X-ray diffraction, 1 ligand (FNR), 3 pockets (best druggability 0.51). MolNFT v1 #80794 on GenesisL1: 3D…
- PDB
- 3U7R
- Type
- protein
- Length
- 364 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NADPH-dependent FMN reductase
- UniProt
- A1B9E3
- Ligands
- FNR
- Pockets
- 3 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | NADPH-dependent FMN reductase | protein | 182 | 44% helix, 19% strand | A1B9E3 |
Ligands and binding sites
- FNR · 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydro-2H-benzo[g]pteridin-1-id-10(5H)-yl)-5-O-phosphonato-D-ribitol · ligand · 2 copies · chains A, B
- 2PE · Nonaethylene glycol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 204 | 0.51 | 0.77 | 31 | FNR |
| 2 | 197 | 0.51 | 0.77 | 23 | FNR |
| 3 | 50 | 0.30 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1226 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 3U7R · FerB - flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from Paracoccus denitrificans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1B9E3
- Elsewhere: RCSB PDB 3U7R · PDBe 3U7R · UniProt A1B9E3
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